Videos

Probing Membrane Protein Structure and Dynamics by NMR and Single Molecule Fluorescence

Presenter
April 25, 2011
Abstract
Structures of membrane proteins have been challenging to solve by any structural technique. We are developing solution NMR spectroscopy as a tool to study the structure and dynamics of membrane proteins, including bacterial outer membrane porins. This class of membrane proteins has proven particularly beneficial for these studies because (i) a larger chemical shift dispersion of residues is observed in β-sheets than in α-helices and (ii) much larger numbers of long-range NOEs can be observed in β-sheet vs. α-helical membrane proteins. Progress in this area will be illustrated with the small ion pore OmpA [1]. The gating of the OmpA ion channel has been studied by electrophysiological and thermodynamic approaches [2] and attempts to correlate these findings with dynamical properties of the protein will be illustrated [3]. Structural refinements can be obtained by including residual dipolar couplings and paramagnetic relaxation enhancements [4]. The methods have also been extended to solving the solution structure of the 33 kDa pH-gated porin OmpG embedded in a protein/DPC complex estimated to be about 80-90 kDa [5]. References: 1. Arora, A., Abildgaard, F., Bushweller, J.H., and Tamm, L.K. (2001) Structure of the outer membrane protein A transmembrane domain in detergent micelles by NMR spectroscopy. Nature Struct. Biol. 8:334-338. 2. Hong, H., Szabo, G., and Tamm, L.K. (2006) Electrostatic side-chain couplings in the gating of the OmpA ion channel suggest a mechanism for pore opening. Nature Chem. Biol. 11:627-635 3. Liang, B., Arora, A., and Tamm, L.K. (2010) Fast-time scale dynamics of outer membrane protein A by extended model-free analysis of NMR relaxation data. (Special issue: dynamics of membrane proteins by NMR) Biochim. Biophys. Acta 1798:68-76. 4. Liang, B., Bushweller, J.H., and Tamm, L.K. (2006) Site-directed parallel spin-labeling and paramagnetic relaxation enhancement in structure determination of membrane proteins by solution NMR. J.A.C.S., 126:4389-439. 5. Liang, B. and Tamm, L.K. (2007) Structure of outer membrane protein G by solution NMR. PNAS 104:16140-1614