Abstract
DNA topology and geometry
Linking number, writhe, twist
The theorem of Calugareanu and White, DNA supercoiling
Methods for calculating and estimating writhe
Surface linking number, linking number paradox
DNA knots and catenanes, topoisomerases, recombination
DNA elasticity
Idealized elastic rod model, equilibrium configurations,
supercoiling of rings, bifurcations
Elastic rod models with intrinsic curvature, kinetoplast
DNA
Higher order continuum models, kinkable DNA
Base-pair level models, sequence-dependence of DNA
elasticity
DNA looping, role of looping in transcription regulation
Electrostatic effects