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A mathematical model of cell fate reprogramming: From open loop to closed loop feedback control

March 2, 2017
Abstract
A mathematical model of cell fate reprogramming: From open loop to closed loop feedback control Domitilla Del Vecchio Massachusetts Institute of Technology To artificially reprogram cell fate, experimentalists manipulate the gene regulatory networks (GRNs) that maintain a cell’s phenotype. In practice, reprogramming is often performed by constant overexpression of specific transcription factors (TFs). This process can be unreliable and inefficient. Here, we focus on induced pluripotent stem cell reprogramming (iPSC) as a case study. We propose a mathematical model demonstrating how constant overexpression may not succeed in general since it is reliant on the GRN's dynamics. In particular, because the core pluripotency GRN is cooperative, certain state transitions are not possible with constant overexpression. We therefore propose an alternative reprogramming strategy: a synthetic genetic feedback controller that dynamically steers the concentration of a GRN’s key TFs to any desired value. The controller works by adjusting TF expression based on the discrepancy between desired and actual TF concentrations. Theory predicts that this reprogramming strategy is guaranteed to succeed, and its performance is independent of the GRN’s structure and parameters, provided that feedback gain is sufficiently high. Paper: D. Del Vecchio, H. Abdallah, Y. Qian, and J. J. Collins. A blueprint for a synthetic genetic controller to reprogram cell fate. Cell Systems, 4:1-12, January 2017. http://dx.doi.org/10.1016/j.cels.2016.12.001
Supplementary Materials