Videos

When do Michealis-Menten or Hill type propensity functions lead accurate stochastic simulations?

Presenter
February 25, 2016
Abstract
The non-elementary reaction functions (e.g. Michaelis-Menten or Hill functions) are used to reduce the determinsitic models of biochemical networks. Such deterministic reductions are frequently a basis for heuristic stochastic models in which non-elementary reaction functions are used as propensities of Gillespie algorithm. Despite the popularity of this heuristic stochastic simualtions, it remains unclear when such stochastic reductions are valid. In this talk, I will present conditions under which the stochastic models with the non-elementary propensity functions accurately approximate the full stochastic models. If the validity condition is satisfied, we can perform accurate and computationally inexpensive stochastic simulation without converting the non-elementary functions to the elementary functions (e.g. mass action kinetics).